RID=1114712465-3970-150528896117.BLASTQ2, gi|15792356|ref|NP_282179.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni NCTC 11168]

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1114712465-3970-150528896117.BLASTQ2
Query= gi|15792356|ref|NP_282179.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni NCTC 11168] (214 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 2,451,910 sequences; 830,480,838 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Results of PSI-Blast iteration 2 No new sequences were found above the 0.005 threshold!
Taxonomy reports
Distribution of 21 Blast Hits on the Query Sequence


Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold

                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|57237916|ref|YP_179164.1|  outer membrane liproprotein MapA [C...   378   e-104 

 gi|57168899|ref|ZP_00368029.1|  outer membrane liproprotein MapA ...   374   e-103 

 gi|57505474|ref|ZP_00371402.1|  outer membrane liproprotein MapA ...   354   9e-97 

 gi|57240556|ref|ZP_00368505.1|  outer membrane liproprotein MapA ...   318   6e-86 


Sequences with E-value WORSE than threshold


 gi|18978131|ref|NP_579488.1|  hypothetical protein PF1759 [Pyroco...    38   0.24  

 gi|51557431|gb|AAU06402.1|  protocadherin 2 gamma 17 [Danio rerio]      37   0.30  

 gi|24372960|ref|NP_717002.1|  hypothetical protein SO1382 [Shewan...    36   0.60  

 gi|5457927|emb|CAB49417.1|  Kef-type K+ transport systems, predic...    35   1.1   

 gi|48425403|pdb|1RWL|A  Chain A, Extracellular Domain Of Mycobact...    35   1.2   

 gi|31792118|ref|NP_854611.1|  TRANSMEMBRANE SERINE/THREONINE-PROT...    35   1.2   

 gi|15608071|ref|NP_215446.1|  TRANSMEMBRANE SERINE/THREONINE-PROT...    35   1.2   

 gi|14591442|ref|NP_143522.1|  hypothetical protein PH1678 [Pyroco...    35   1.5   

 gi|6723967|emb|CAB66441.1|  orp4 [Schizosaccharomyces pombe] >gi|...    35   1.6   

 gi|55168094|gb|AAV43962.1|  hypothetical protein [Oryza sativa (j...    35   1.6   

 gi|2584861|gb|AAC45884.1|  cytochrome c precursor [Pectobacterium...    34   2.3   

 gi|30698217|ref|NP_201432.2|  kinesin motor family protein [Arabi...    34   2.3   

 gi|10177425|dbj|BAB10710.1|  kinesin heavy chain DNA binding prot...    34   2.3   

 gi|48861806|ref|ZP_00315705.1|  COG0661: Predicted unusual protei...    33   5.2   

 gi|57167958|ref|ZP_00367097.1|  probable lipoprotein Cj1074c [Cam...    33   7.8   

 gi|10185169|emb|CAC08545.1|  SPBP16F5.06 [Schizosaccharomyces pom...    32   9.1   

 gi|11466501|ref|NP_044750.1|  RNA polymerase subunit beta' [Recli...    32   9.4   









Alignments

>gi|57237916|ref|YP_179164.1|   outer membrane liproprotein MapA [Campylobacter jejuni RM1221]
 gi|57166720|gb|AAW35499.1|   outer membrane liproprotein MapA [Campylobacter jejuni RM1221]
 gi|6968465|emb|CAB73285.1|   putative lipoprotein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|804978|emb|CAA56437.1|   mapA [Campylobacter jejuni]
 gi|2120551|pir||I40768   probable lipoprotein Cj1029c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 gi|15792356|ref|NP_282179.1|   putative lipoprotein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|20138593|sp|Q46122|MAPA_CAMJE   Outer membrane liproprotein mapA precursor
          Length = 214

 Score =  378 bits (972), Expect = e-104
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG 60
           MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG
Sbjct: 1   MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG 60

Query: 61  IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELE 120
           IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELE
Sbjct: 61  IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELE 120

Query: 121 ARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTIRTK 180
           ARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTIRTK
Sbjct: 121 ARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTIRTK 180

Query: 181 QDVQGFDDLKETTFYTHLLIKQMANKAASLISEL 214
           QDVQGFDDLKETTFYTHLLIKQMANKAASLISEL
Sbjct: 181 QDVQGFDDLKETTFYTHLLIKQMANKAASLISEL 214



>gi|57168899|ref|ZP_00368029.1|   outer membrane liproprotein MapA [Campylobacter coli RM2228]
 gi|57019735|gb|EAL56421.1|   outer membrane liproprotein MapA [Campylobacter coli RM2228]
          Length = 214

 Score =  374 bits (961), Expect = e-103
 Identities = 165/214 (77%), Positives = 190/214 (88%)

Query: 1   MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG 60
           M KK L FI   LFL+ACA+KQ+TF QVNQ+SK SQC  CES  GFEAKIKGLLY+SD+G
Sbjct: 1   MNKKILFFIALALFLNACASKQNTFTQVNQLSKASQCVPCESSSGFEAKIKGLLYVSDIG 60

Query: 61  IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELE 120
           IQCCANKRTLDTG+ALKKVYLHRFYDLKE QKVLNA G+KLFV+++FNA+FY YLKQELE
Sbjct: 61  IQCCANKRTLDTGVALKKVYLHRFYDLKEEQKVLNANGQKLFVNLDFNAIFYVYLKQELE 120

Query: 121 ARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTIRTK 180
           ARGI+VLD+N  NSPYV+KIDL F  Y A QD++GLHS+LVGVL +SDINKNKKFT+RTK
Sbjct: 121 ARGIIVLDDNKANSPYVTKIDLAFTGYSAKQDSLGLHSRLVGVLSLSDINKNKKFTLRTK 180

Query: 181 QDVQGFDDLKETTFYTHLLIKQMANKAASLISEL 214
           QDVQGF++LK+ +FYTHLLIKQMANKAAS+ISEL
Sbjct: 181 QDVQGFENLKDISFYTHLLIKQMANKAASIISEL 214



>gi|57505474|ref|ZP_00371402.1|   outer membrane liproprotein MapA [Campylobacter upsaliensis RM3195]
 gi|57016299|gb|EAL53085.1|   outer membrane liproprotein MapA [Campylobacter upsaliensis RM3195]
          Length = 214

 Score =  354 bits (909), Expect = 9e-97
 Identities = 148/214 (69%), Positives = 186/214 (86%)

Query: 1   MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG 60
           M K +L+ +  +L  + C+ KQD FAQVNQ+SKN++C SC+S  GFEAKIKGLLYISDVG
Sbjct: 1   MMKNYLLALFALLVFAGCSAKQDAFAQVNQVSKNTKCYSCDSAQGFEAKIKGLLYISDVG 60

Query: 61  IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELE 120
           I CCA+KRTLDTG+ALKKVYLHRFYDLKE QKV+  K +K ++D+NFNA+FYTYLKQELE
Sbjct: 61  INCCADKRTLDTGVALKKVYLHRFYDLKEEQKVVYIKNQKYYIDLNFNAIFYTYLKQELE 120

Query: 121 ARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTIRTK 180
           ARGIVVLD+ND+NSPYV+K++L F  + + QD++GLHS+LVGVL ++DIN++KKFT+RTK
Sbjct: 121 ARGIVVLDSNDKNSPYVTKVNLSFSGFTSKQDSLGLHSRLVGVLSLNDINRDKKFTLRTK 180

Query: 181 QDVQGFDDLKETTFYTHLLIKQMANKAASLISEL 214
           QDV+GF++L + +FYTHLLIKQMANKAASLIS L
Sbjct: 181 QDVKGFENLSDLSFYTHLLIKQMANKAASLISSL 214



>gi|57240556|ref|ZP_00368505.1|   outer membrane liproprotein MapA [Campylobacter lari RM2100]
 gi|57018897|gb|EAL55670.1|   outer membrane liproprotein MapA [Campylobacter lari RM2100]
          Length = 215

 Score =  318 bits (816), Expect = 6e-86
 Identities = 103/217 (47%), Positives = 145/217 (66%), Gaps = 5/217 (2%)

Query: 1   MFKKFLIFIVPILFLSACAT--KQDTFAQVNQISK-NSQCSSCESPGGFEAKIKGLLYIS 57
           MFKK  + I+  LF  ACA   K    A+VN++ K  ++C +      +EAKIKGL+YIS
Sbjct: 1   MFKKIFVCIL-TLFFGACAINPKNQGIAKVNEVIKIQAECYNPSDSKAYEAKIKGLVYIS 59

Query: 58  DVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQ 117
           DVG++ C NKRT+D   +LKKVY+HR YDL E  K  ++ G   +++ NFN  FY +LK+
Sbjct: 60  DVGLKYCTNKRTIDKSASLKKVYIHRVYDLNENLKYSSSNGSNYYINENFNYYFYVFLKE 119

Query: 118 ELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLVGVLQVSDINKNKKFTI 177
           ELE RGIVV++N  Q+SPYV ++DL F  + +  D+  L S +   L + DIN NK   I
Sbjct: 120 ELENRGIVVVENT-QDSPYVLRVDLSFNDFYSKFDSNSLFSIIASQLTLKDINTNKTINI 178

Query: 178 RTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL 214
           +TKQ+V+GF ++K+  F+T LLIKQ+ANK+A +IS L
Sbjct: 179 KTKQEVKGFYNIKDLPFFTQLLIKQVANKSADIISSL 215



>gi|18978131|ref|NP_579488.1|   hypothetical protein PF1759 [Pyrococcus furiosus DSM 3638]
 gi|18893932|gb|AAL81883.1|   hypothetical protein [Pyrococcus furiosus DSM 3638]
          Length = 481

 Score = 37.7 bits (87), Expect = 0.24
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 97  KGKKLFVDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKI 140
           +  K + D N+N  +   L  EL+  G +V++N++ N+PY++++
Sbjct: 284 RNSKFYSDENWNLSYLPNLLAELQVLGFIVIENSEFNNPYLAEV 327



>gi|51557431|gb|AAU06402.1|   protocadherin 2 gamma 17 [Danio rerio]
          Length = 956

 Score = 37.3 bits (86), Expect = 0.30
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 94  LNAKGKKLFVDVN---FNAVFYTYLKQELEARG--IVVLDNNDQNSPYVSKIDLEFISYG 148
           +N     L V+ N   FN   Y     E   +G  I  ++  D +S     I L F    
Sbjct: 234 VNIDVTVLDVNDNAPVFNQTVYRASVTENAPKGTYITTVNATDADSGSNGHITLSFSDL- 292

Query: 149 ATQDAIGLHSK-----LVGVLQVSDINKNKKFTIRTKQDVQG 185
             + + G+ +      LV VL   D  K+K+F IR K   QG
Sbjct: 293 -KEQSRGIFNIDENTGLVSVLGNIDFEKDKRFEIRVKATDQG 333



>gi|24372960|ref|NP_717002.1|   hypothetical protein SO1382 [Shewanella oneidensis MR-1]
 gi|24347106|gb|AAN54447.1|   hypothetical protein [Shewanella oneidensis MR-1]
          Length = 308

 Score = 36.2 bits (83), Expect = 0.60
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 70  LDTGI--ALKKVYLHRFYDLKEGQKVLNAKGKKLFVDVNFNAVFYTYLKQELEARGIVVL 127
           +D G+  ALKKVY  + Y   E           +F DV+    FY+Y  Q L A  I ++
Sbjct: 1   MDKGLFNALKKVYAKKVYRKDEHGYQQRIDNGDVF-DVDTGTYFYSY--QGLSAAEIALI 57

Query: 128 DNNDQNSPYVSKIDLEFI----SYGA--TQDAIGLHSKLVGVL 164
           + +    P   +++L        Y A   Q  + L + L   L
Sbjct: 58  EQS--GYPVNDRVNLSHDDVVLGYKAILKQPNLSLENLLAAYL 98



>gi|5457927|emb|CAB49417.1|   Kef-type K+ transport systems, predicted NAD-binding component
           [Pyrococcus abyssi GE5]
 gi|14520711|ref|NP_126186.1|   hypothetical protein PAB0334 [Pyrococcus abyssi GE5]
 gi|7517830|pir||B75167   hypothetical protein PAB0334 - Pyrococcus abyssi (strain Orsay)
          Length = 481

 Score = 35.4 bits (81), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 97  KGKKLFVDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKI 140
           +  KL+ D N+N  +   L  EL   G +V++N   N+PY++++
Sbjct: 284 RNTKLYSDENWNLAYLPNLLAELNVYGFIVIENCQFNNPYLAEV 327



>gi|48425403|pdb|1RWL|A   Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
 gi|48425402|pdb|1RWI|A   Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
 gi|48425401|pdb|1RWI|B   Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
          Length = 270

 Score = 35.4 bits (81), Expect = 1.2
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 43  PGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF 102
           P G     +G +Y++D G     N R +      K   +  F  L +   V       ++
Sbjct: 110 PEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 164

Query: 103 V-DVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLV 161
           V D + N V    +K E E+   VVL   D  +P+   +D     Y    +   +   L 
Sbjct: 165 VTDTDNNRV----VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220

Query: 162 G-----VLQVSDINK 171
           G     VL  + +N 
Sbjct: 221 GSTTSTVLPFTGLNT 235



>gi|31792118|ref|NP_854611.1|   TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKNDb [SECOND
           PART](PROTEIN KINASE D) (STPK D) [Mycobacterium bovis
           AF2122/97]
 gi|31617706|emb|CAD93815.1|   TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKNDb [SECOND
           PART](PROTEIN KINASE D) (STPK D) [Mycobacterium bovis
           AF2122/97]
          Length = 369

 Score = 35.4 bits (81), Expect = 1.2
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 43  PGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF 102
           P G     +G +Y++D G     N R +      K   +  F  L +   V       ++
Sbjct: 217 PEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 271

Query: 103 V-DVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLV 161
           V D + N V    +K E E+   VVL   D  +P+   +D     Y    +   +   L 
Sbjct: 272 VTDTDNNRV----VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 327

Query: 162 G-----VLQVSDINK 171
           G     VL  + +N 
Sbjct: 328 GSTTSTVLPFTGLNT 342



>gi|15608071|ref|NP_215446.1|   TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN
           KINASE D) (STPK D) [Mycobacterium tuberculosis H37Rv]
 gi|6066600|emb|CAA67929.2|   serine/threonine protein kinase [Mycobacterium tuberculosis]
 gi|2078052|emb|CAB08487.1|   TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN
           KINASE D) (STPK D) [Mycobacterium tuberculosis H37Rv]
 gi|13880519|gb|AAK45205.1|   serine/threonine protein kinase [Mycobacterium tuberculosis
           CDC1551]
 gi|13431760|sp|O05871|PKND_MYCTU   Serine/threonine-protein kinase pknD
 gi|15840354|ref|NP_335391.1|   serine/threonine protein kinase [Mycobacterium tuberculosis
           CDC1551]
          Length = 664

 Score = 35.4 bits (81), Expect = 1.2
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 43  PGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF 102
           P G     +G +Y++D G     N R +      K   +  F  L +   V       ++
Sbjct: 512 PEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 566

Query: 103 V-DVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKLV 161
           V D + N V    +K E E+   VVL   D  +P+   +D     Y    +   +   L 
Sbjct: 567 VTDTDNNRV----VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 622

Query: 162 G-----VLQVSDINK 171
           G     VL  + +N 
Sbjct: 623 GSTTSTVLPFTGLNT 637



>gi|14591442|ref|NP_143522.1|   hypothetical protein PH1678 [Pyrococcus horikoshii OT3]
 gi|3258107|dbj|BAA30790.1|   481aa long hypothetical protein [Pyrococcus horikoshii OT3]
 gi|7519237|pir||F71048   hypothetical protein PH1678 - Pyrococcus horikoshii
          Length = 481

 Score = 35.0 bits (80), Expect = 1.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 97  KGKKLFVDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKI 140
           +  +L+ D N+N  +   L  EL   G +V+DN   N+PY++++
Sbjct: 284 RNTRLYSDENWNLAYLPNLLAELNVYGFIVIDNCQFNNPYLAEV 327



>gi|6723967|emb|CAB66441.1|   orp4 [Schizosaccharomyces pombe]
 gi|4512109|gb|AAD21618.1|   origin recognition complex subunit 4-related protein Orp4p
           [Schizosaccharomyces pombe]
 gi|15214180|sp|Q9Y794|ORC4_SCHPO   Origin recognition complex subunit 4
 gi|19112617|ref|NP_595825.1|   origin recognition complex subunit 4-related protein orp4p
           [Schizosaccharomyces pombe]
          Length = 972

 Score = 35.0 bits (80), Expect = 1.6
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 39  SCESPGGFEAKIKGLLYISDVG----IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVL 94
              S   FE  +K +LY+SD G    I  C N+R +D  ++  + +LH+   L +     
Sbjct: 745 PPSSLSEFEQILKSVLYVSDEGGKDQIITCWNQR-VDELLSDTRSHLHK---LVQHHYFA 800

Query: 95  NAKGKKLFVDVNF 107
           +   K L+VD+ F
Sbjct: 801 SRNLKLLYVDLLF 813



>gi|55168094|gb|AAV43962.1|   hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 593

 Score = 34.6 bits (79), Expect = 1.6
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 30  QISKNSQCSSCESPGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKE 89
           +I K  +  SC +      K KGLL         C N   L   ++  K YL RFYD K+
Sbjct: 328 EIVKQDEVFSCSTCR----KQKGLL-------DACKNCAILTQEVSYLKSYLQRFYDGKK 376

Query: 90  GQKVLNAKGKK 100
              ++  + KK
Sbjct: 377 NFNMILDQSKK 387



>gi|2584861|gb|AAC45884.1|   cytochrome c precursor [Pectobacterium cypripedii]
 gi|11248842|pir||C38575   gluconate 2-dehydrogenase (FAD) (EC 1.1.99.3) cytochrome chain
          precursor [validated] - Erwinia cypripedii
          Length = 441

 Score = 34.3 bits (78), Expect = 2.3
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 1  MFKKFLIFIVPILFLSACATKQDTFAQVNQ---ISKNSQCSSCESPGGFEAKIKGLLYIS 57
          M K  L  ++  L  +A A  Q   A V +   +++   C +C S  G +    GL   +
Sbjct: 1  MMKSILALVLGTLSFAALADDQANDALVKRGEYLARAGDCVACHSVKGGQPFAGGLPMAT 60

Query: 58 DVGIQCCAN 66
           +G     N
Sbjct: 61 PIGTIYSTN 69



>gi|30698217|ref|NP_201432.2|   kinesin motor family protein [Arabidopsis thaliana]
          Length = 1063

 Score = 34.3 bits (78), Expect = 2.3
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 29  NQISKNSQCSSCESPGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLK 88
           N++S N           FE +  G   IS          RT +T     K  +HR  + +
Sbjct: 801 NEMSPNESPFRPSDASVFELQTSGRASIS--------QDRTEETAAQKDKQIIHRSMEER 852

Query: 89  EGQKVLNAKGKKLFVD 104
           E QK L +   K F D
Sbjct: 853 E-QKFLASNSTKSFKD 867



>gi|10177425|dbj|BAB10710.1|   kinesin heavy chain DNA binding protein-like [Arabidopsis thaliana]
          Length = 1037

 Score = 34.3 bits (78), Expect = 2.3
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 29  NQISKNSQCSSCESPGGFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLK 88
           N++S N           FE +  G   IS          RT +T     K  +HR  + +
Sbjct: 801 NEMSPNESPFRPSDASVFELQTSGRASIS--------QDRTEETAAQKDKQIIHRSMEER 852

Query: 89  EGQKVLNAKGKKLFVD 104
           E QK L +   K F D
Sbjct: 853 E-QKFLASNSTKSFKD 867



>gi|48861806|ref|ZP_00315705.1|   COG0661: Predicted unusual protein kinase [Microbulbifer degradans
           2-40]
          Length = 534

 Score = 33.1 bits (75), Expect = 5.2
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 17/107 (15%)

Query: 53  LLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKE------GQKVLNAKGKKLFVDVN 106
           LLY+  V  Q C NK  +     ++++Y     D+++        K+L  +G ++F    
Sbjct: 219 LLYVPAVHWQYCTNKVMV-----MERIYGIPVTDMEKINAQSTNLKLLAERGVEVF---- 269

Query: 107 FNAVF-YTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQD 152
           F  VF + +   ++    + V   N QN  Y++ +D+  I     +D
Sbjct: 270 FKQVFEHNFFHADMHPGNVFVSPANPQNPSYMA-VDMAIIGSLTKED 315



>gi|57167958|ref|ZP_00367097.1|   probable lipoprotein Cj1074c [Campylobacter coli RM2228]
 gi|57020332|gb|EAL57001.1|   probable lipoprotein Cj1074c [Campylobacter coli RM2228]
          Length = 215

 Score = 32.7 bits (74), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 1  MFKKFLIFIVPILFLSACATKQD 23
          M K F + I+  +  SAC+TK D
Sbjct: 1  MKKNFFLCILLGILFSACSTKND 23



>gi|10185169|emb|CAC08545.1|   SPBP16F5.06 [Schizosaccharomyces pombe]
 gi|19112572|ref|NP_595780.1|   putative nucleolar protein required for 60S ribosome biogenesis
           [Schizosaccharomyces pombe]
          Length = 478

 Score = 32.3 bits (73), Expect = 9.1
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 97  KGKKLFVDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGL 156
           KG KL ++      +   L+QE +   +   +N+++N  + SK+DLE   +       G 
Sbjct: 74  KGSKLRIEEA-RPYYLVKLQQEKKIADLQSTNNDEKNEDHSSKVDLEDPVFHGEIIVPGK 132

Query: 157 HSKLVGVLQVSDINKN 172
           HSK + V+  SD+ K+
Sbjct: 133 HSKNMQVVTDSDVRKD 148



>gi|11466501|ref|NP_044750.1|   RNA polymerase subunit beta' [Reclinomonas americana]
 gi|7434735|pir||S78132   DNA-directed RNA polymerase (EC 2.7.7.6) beta' chain - Reclinomonas
           americana (ATCC 50394) mitochondrion
 gi|2258331|gb|AAD11865.1|   RNA polymerase subunit beta' [Reclinomonas americana]
          Length = 1384

 Score = 32.3 bits (73), Expect = 9.4
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 102 FVDVNFNAVFYTYLKQELEA--RGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSK 159
           FV+++F  V   + K+E+ +  + I  L+N ++ S ++    + F  Y A +  I LH  
Sbjct: 594 FVNIDFKYVNKVFDKKEIVSLIKMISNLNNLNKTS-FILDQIMSFGFYYAYKAGISLHK- 651

Query: 160 LVGVLQVSDINK---NKKFTIRTKQDVQGFDDLKETT 193
                  +DIN     + F  +TK+ V+  DDLK  +
Sbjct: 652 -------NDINTPNLKELFVYKTKKKVE--DDLKNFS 679






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
    Posted date:  Apr 27, 2005 12:22 AM
  Number of letters in database: 830,480,838
  Number of sequences in database:  2,451,910
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,478,047
Number of Sequences: 2451910
Number of extensions: 5106126
Number of successful extensions: 11948
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11944
Number of HSP's gapped (non-prelim): 24
length of query: 214
length of database: 830,480,838
effective HSP length: 122
effective length of query: 92
effective length of database: 531,347,818
effective search space: 48883999256
effective search space used: 48883999256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.5 bits)