RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0
gi|15792356|ref|NP_282179.1| putative lipoprotein [Campylobacter
jejuni subsp. jejuni NCTC 11168]
(214 letters)
Database: cdd.v2.03
| PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
| gnl|CDD|12187 |
COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cel... |
36.9 |
0.002 |
gnl|CDD|12187, COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
CD-Length = 211 residues, only 50.2% aligned
Score = 36.9 bits (85), Expect = 0.002
Query: 1 MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPGGFEAKIKGLLYISDVG 60
Sbjct: 5 MMKLLLALALLLLFLSACAQAGEAASQLKERLAKVK--------SYSASFTQTVESGS-- 54
Query: 61 IQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLFV-DVNFNAVFYTYLKQEL 119
Sbjct: 55 -----GKQTQEGKLWIKRPNLFRWEYESPDEQVIVSDGKTVWIYDPDLEQVTKTWLSEAT 109
Query: 120 E 120
Sbjct: 110 G 110
Citing CD-Search:
Marchler-Bauer A, Bryant SH (2004),
"CD-Search: protein domain annotations on the fly.",
Nucleic Acids Res. 32:W327-331.
|
